2020
De Marchi, Bruno Rossitto, Tonny Kinene, Renate Krause-Sakate, Laura M Boykin, Joseph Ndunguru, Monica Kehoe, Elijah Ateka, Fred Tairo, Jamisse Amisse, Peter Sseruwagi. 2020. Genetic diversity and SNP’s from the chloroplast coding regions of virus-infected cassava. PeerJ 8:e8632.
https://peerj.com/articles/8632
Nzilani, N.M, George Edward Mamati, Elijah Miinda Ateka, Fredah K Rimberia, George Ochieng’ Asudi, Laura M Boykin, Eunice M Machuka, Joyce Njoki Njuguna, Roger Pelle, Francesca Stomeo. 2020Metagenomic Analysis of Plant Viruses Associated with Papaya Ringspot Disease in Carica papaya L. in Kenya. Frontiers in Microbiology 11: 205.
https://www.frontiersin.org/articles/10.3389/fmicb.2020.00205/full
Nevill, P.G., Xiao Zhong, Julian Tonti-Filippini, Margaret Byrne, Michael Hislop, Kevin Thiele, Stephen van Leeuwen, Laura M Boykin, Ian Small. 2020. Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics. Plant Methods 16(1): 1-8.
https://plantmethods.biomedcentral.com/articles/10.1186/s13007-019-0534-5
2019
63. Boykin, L.M, P. Sseruwagi, T. Alicai, E. Ateka, I.U. Mohammed, J.L. Stanton, C.Kayuki, D.Mark, T. Fute, J.Erasto, H.Bachwenkizi, B. Muga, N.Mumo, J. Mwangi, P. Abidrabo, G. Okao-Okuja, G. Omuut, J.Akol, H.B. Apio, F. Osingada, M.A. Kehoe, D. Eccles, A. Savill, S. Lamb, T.Kinene, C.B. Rawle, A. Muralidhar, K. Mayall, F.Tairo, J. Ndunguru. 2019. Tree Lab: Portable genomics for early detection of plant viruses and pests in Sub-Saharan Africa.
62. Zeyimo Bakelana, Laura M. Boykin, Nzola Mahungu, Ndofula Mavila, Magole Matondo, Nduandele Nlandu, Ndomateso Tevo, Godefroid Monde, Pita Justin, Munseki Lema, Kanana Tshilenge. 2019. First Report and Preliminary Evaluation of Cassava Root Necrosis in Angola. International Journal of Agriculture, Environment and Bioresearch 4(3): 37-46.
61. Amisse, J. J. G., J. Ndunguru, F. Tairo, E. Ateka, L. M. Boykin, M. A. Kehoe, N. Cossa, C. Rey, P. Sseruwagi, 2019. Analyses of seven new whole genome sequences of cassava brown streak viruses in Mozambique reveals two distinct clades: evidence for new species. Plant Pathology, online first 12 February 2019 https://doi.org/10.1111/ppa.13001
62. Wainaina, J.M, E. Ateka, T. Makori, M.A. Kehoe, L.M. Boykin. 2019. A metagenomic study of DNA viruses from samples of local varieties of common bean in Kenya. PeerJ 7:e6465 https://doi.org/10.7717/peerj.6465
59. Wainaina, J.M., L. Kubatko, J. Harvey, E. Ateka, T. Makori, D. Karanja., L.M. Boykin, M.A. Kehoe. 2019. Evolutionary insights of Bean common mosaic necrosis virus and Cowpea aphid-borne mosaic virus. PeerJ 10.7717/peerj.6297
58. Bakelana, Z., E. Magembe, L.M. Boykin, M. Macharia, N. Mahungu, K.Tata-Hangy, D. Lutete, K. Monde, J. Harvey, J. Ndunguru, C, Kayuki, J., Pita, J., KM. Lema, K. Tshilenge. 2019. Attempts to Identify Cassava Brown Streak Virus in Western Democratic Republic of Congo. Journal of Agricultural Science 11(2): 31-39.http://www.ccsenet.org/journal/index.php/jas/article/view/0/38056
57. Nevill, Paul G., Katharine A Howell, Adam T Cross, Anna V Williams, Xiao Zhong, Julian Tonti-Filippini, Laura M Boykin, Kingsley W Dixon, Ian Small. Plastome-wide rearrangements and gene losses in carnivorous Droseraceae. 2019. Genome Biology and Evolution. In Press. https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evz005/5284917
2018
56. Amisse, Jamisse JG, Joseph Ndunguru, Fred Tairo, Laura M Boykin, Monica A Kehoe, Nurbibi Cossa, Elijah Ateka, Chrissie Rey, Peter Sseruwagi. 2018. First report of Cassava brown streak viruses on wild plant species in Mozambique. Physiological and Molecular Plant Pathology. In press. https://www.sciencedirect.com/science/article/pii/S0885576518301528
55. de Moraes, Letícia Aparecida, Cristiane Muller, Regiane Cristina Oliveira de Freitas Bueno, Antônio Santos, Vinicius Henrique Bello, Bruno Rossitto De Marchi, Luís Fernando Maranho Watanabe, Julio Massaharu Marubayashi, Beatriz Rosa Santos, Valdir Atsushi Yuki, Hélio Minoru Takada, Danielle Ribeiro de Barros, Carolina Garcia Neves, Fábio Nascimento da Silva, Mayra Juline Gonçalves, Murad Ghanim, Laura Boykin, Marcelo Agenor Pavan, Renate Krause-Sakate. 2018. Distribution and phylogenetics of whiteflies and their endosymbiont relationships after the Mediterranean species invasion in Brazil. Scientific Reports 8(1): 14589. https://www.nature.com/articles/s41598-018-32913-1
54. M Shadmany, LM Boykin, R Muhamad, D Omar. 2018. Genetic Diversity of Bemisia tabaci (Hemiptera: Aleyrodidae) Species Complex Across Malaysia. Journal of economic entomology doi: 10.1093/jee/toy273.
53. De Marchi, B.R., Kinene, T., Wainiana, J.M., Krause-Sakate, R. and L.M. Boykin. 2018. Comparative transcriptome analysis reveals genetic diversity in the endosymbiont Hamiltonella between native and exotic populations of Bemisia tabaci from Brazil. PlosOne
https://doi.org/10.1371/journal.pone.0201411
52. Wainaina, J.M., Jagger, H., Ateka, E., Makori, T. Karanja, D., M.A. Kehoe and L.M. Boykin. 2018. Genomic Characterisation and evolutionary relationships of groundnut rosette virus from the western highlands of Kenya. Tropical Plant Pathology https://doi.org/10.1007/s40858-018-0240-2
51. Sseruwagi, P., Boykin, L.M., Tairo, F., Umfuyisoni, J., Fute, T., Kalekayo, D., Harinjaka, R., Savill, A. & Ndunguru, J. 2018. Sub-Saharan Africa 1 is the dominant cryptic species of Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) associated with cassava in Madagascar. Israel Journal of Entomology 48 (2): 123–140. http://doi.org/10.5281/zenodo.1323193
50. Boykin, L.M., Ammar Ghalab, Bruno Rossitto De Marchi, Anders Savill, James M Wainaina, Tonny Kinene, Stephen Lamb, Myriam Rodrigues, Monica A Kehoe, Joseph Ndunguru, Fred Tairo, Peter Sseruwagi, Charles Kayuki, Deogratius Mark, Joel Erasto, Hilda Bachwenkizi, Titus Alicai, Geoffrey Okao-Okuja, Phillip Abidrabo, John Francis Osingada, Jimmy Akono, Elijah Ateka, Brenda Muga, Samuel Kiarie. 2018. Real-time portable genome sequencing for global food security. F1000. https://f1000research.com/articles/7-1101/v1
49. Wainaina JM, Ateka E, Makori T, Kehoe MA, Boykin LM. (2018) Phylogenomic relationship and evolutionary insights of sweet potato viruses from the western highlands of Kenya. PeerJ 6:e5254https://doi.org/10.7717/peerj.5254
48. Macfadyen, Sarina, Paull, Cate, Boykin, Laura M., De Barro, Paul, Maruthi, M. N., Ghosh, Saptarshi, Otim, Michael, Kalyebi, Andrew, Vassão, Daniel G., Sseruwagi, Peter, Tay, Wee Tek, Delatte, Helen, Seguni, Zuberi, Colvin, John and Omongo, Christopher Abu. 2018. Cassava whitefly, Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae), in sub-Saharan African farming landscapes: a review of the factors determining abundance. Bulletin of Entomological Research. ISSN 0007-4853 (Print), 1475-2670 (doi:10.1017/S0007485318000032)
47. Boykin, L.M., T. Kinene, J. Wainaina, S. Seal, H. Mugerwa, S. Macfadyen, P. De Barro, W.T. Tay, L. Kubatko, T. Alicai, C.A. Omongo, F. Tairo, J. Ndunguru and P. Sseruwagi. 2018. Review and future guide to the naming system of African Bemisia tabaci species. Systematic Entomology. Accepted January 2018
46. Sseruwagi, P., Wainaina, J.M., Ndunguru, J., Tumuhimbise, R., Tairo, F., Guo, J., Vrielink, A., Blythe, A., Kinene, T., De Marchi, B., Kehoe, M.A., Tanz, S.K. & Boykin, L.M. 2018. The first transcriptomes from field-collected individual whiteflies (Bemisia tabaci, Hemiptera: Aleyrodidae): a case study of the endosymbiontcomposition. Gates Open Res 2018, 1:16 (doi: 10.12688/gatesopenres.12783.3)
45. Mulenga, Rabson M., Boykin, L.M., Chikoti, P.C, Sichilima, S., Ng’ungi, D. Olufemi, J.A. 2018. Cassava brown streak disease and Ugandan cassava brown streak virus reported for the first time in Zambia. Plant Disease. Accepted February 2018.
2017
44. Ateka, E., T. Alicai, J. Ndunguru, F. Tairo, P. Sseruwagi, S. Kiarie, T. Mikori, M.A. Kehoe and L.M. Boykin. 2017. Unusual occurrence of a DAG motif in the Ipomovirus Cassava brown streak virus and implications for its vector transmission. PlosOne.
43. Boykin, L.M. A. Savill, P. De Barro. 2017. Updated mtCOI reference dataset for the Bemisia tabaci species complex. F1000Research. 6
https://f1000research.com/articles/6-1835/v1
42. Letícia Aparecida de Moraes, Julio Massaharu Marubayashi, Valdir Atsushi Yuki, Murad Ghanim, Vinicius Henrique Bello, Bruno Rossitto De Marchi, Leonardo da Fonseca Barbosa, Laura M Boykin, Renate Krause-Sakate, Marcelo Agenor Pavan. 2017. New invasion of Bemisia tabaci Mediterranean species in Brazil associated to ornamental plants. Phytoparasitica 1-9. https://doi.org/10.1007/s12600-017-0607-9
41. Manani, D. E.M. Ateka, S.R.G. Nyanjom, L.M. Boykin. 2017. Phylogenetic relationships amoung whiteflies in the Bemisia tabaci species complex from major cassava growing areas of Kenya. Insects (81): 25. doi:10.3390/insects8010025
Raw data: www.ncbi.nlm.nih.gov/popset/1153278998
Updated tree post publication (errors were found in original global dataset, we re-downloaded all data directly from GenBank (June 2017), reran the analyses and the tree remains unchanged and can be downloaded here: New Tree.
40. Wainaina, J. De Barro, P.J., Kubatko, L., Kehoe, M.A., Harvey, J., Karanja, D. and L.M. Boykin. 2017. Global Phylogenetic Relationships, Population Structure and Gene Flow Estimation of Trialeurodes vaporariorum (Greenhouse whitefly). Bulletin of Entomological Research.
2016
39. Alicai, T., Ndunguru, J., Sseruwagi,P., Tairo, F., Okao-Okuja,G. Nanvubya, R., Kiiza, L., Kubatko, K., Kehoe,M.A., and Boykin, L.M. 2016. Cassava brown streak virus is outsmarting the cassava immune system with a rapidly evolving genome. Scientific Reports 6: 36164
38. Kinene, T., Wainaina, J., Maina, S., and Boykin, L.M. 2016. Rooting Trees, Methods for. In: Kliman, R.M. (ed.), Encyclopedia of Evolutionary Biology. vol. 3, pp. 489–493. Oxford: Academic Press.
De Marchi, Bruno Rossitto, Tonny Kinene, Renate Krause-Sakate, Laura M Boykin, Joseph Ndunguru, Monica Kehoe, Elijah Ateka, Fred Tairo, Jamisse Amisse, Peter Sseruwagi. 2020. Genetic diversity and SNP’s from the chloroplast coding regions of virus-infected cassava. PeerJ 8:e8632.
https://peerj.com/articles/8632
Nzilani, N.M, George Edward Mamati, Elijah Miinda Ateka, Fredah K Rimberia, George Ochieng’ Asudi, Laura M Boykin, Eunice M Machuka, Joyce Njoki Njuguna, Roger Pelle, Francesca Stomeo. 2020Metagenomic Analysis of Plant Viruses Associated with Papaya Ringspot Disease in Carica papaya L. in Kenya. Frontiers in Microbiology 11: 205.
https://www.frontiersin.org/articles/10.3389/fmicb.2020.00205/full
Nevill, P.G., Xiao Zhong, Julian Tonti-Filippini, Margaret Byrne, Michael Hislop, Kevin Thiele, Stephen van Leeuwen, Laura M Boykin, Ian Small. 2020. Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics. Plant Methods 16(1): 1-8.
https://plantmethods.biomedcentral.com/articles/10.1186/s13007-019-0534-5
2019
63. Boykin, L.M, P. Sseruwagi, T. Alicai, E. Ateka, I.U. Mohammed, J.L. Stanton, C.Kayuki, D.Mark, T. Fute, J.Erasto, H.Bachwenkizi, B. Muga, N.Mumo, J. Mwangi, P. Abidrabo, G. Okao-Okuja, G. Omuut, J.Akol, H.B. Apio, F. Osingada, M.A. Kehoe, D. Eccles, A. Savill, S. Lamb, T.Kinene, C.B. Rawle, A. Muralidhar, K. Mayall, F.Tairo, J. Ndunguru. 2019. Tree Lab: Portable genomics for early detection of plant viruses and pests in Sub-Saharan Africa.
62. Zeyimo Bakelana, Laura M. Boykin, Nzola Mahungu, Ndofula Mavila, Magole Matondo, Nduandele Nlandu, Ndomateso Tevo, Godefroid Monde, Pita Justin, Munseki Lema, Kanana Tshilenge. 2019. First Report and Preliminary Evaluation of Cassava Root Necrosis in Angola. International Journal of Agriculture, Environment and Bioresearch 4(3): 37-46.
61. Amisse, J. J. G., J. Ndunguru, F. Tairo, E. Ateka, L. M. Boykin, M. A. Kehoe, N. Cossa, C. Rey, P. Sseruwagi, 2019. Analyses of seven new whole genome sequences of cassava brown streak viruses in Mozambique reveals two distinct clades: evidence for new species. Plant Pathology, online first 12 February 2019 https://doi.org/10.1111/ppa.13001
62. Wainaina, J.M, E. Ateka, T. Makori, M.A. Kehoe, L.M. Boykin. 2019. A metagenomic study of DNA viruses from samples of local varieties of common bean in Kenya. PeerJ 7:e6465 https://doi.org/10.7717/peerj.6465
59. Wainaina, J.M., L. Kubatko, J. Harvey, E. Ateka, T. Makori, D. Karanja., L.M. Boykin, M.A. Kehoe. 2019. Evolutionary insights of Bean common mosaic necrosis virus and Cowpea aphid-borne mosaic virus. PeerJ 10.7717/peerj.6297
58. Bakelana, Z., E. Magembe, L.M. Boykin, M. Macharia, N. Mahungu, K.Tata-Hangy, D. Lutete, K. Monde, J. Harvey, J. Ndunguru, C, Kayuki, J., Pita, J., KM. Lema, K. Tshilenge. 2019. Attempts to Identify Cassava Brown Streak Virus in Western Democratic Republic of Congo. Journal of Agricultural Science 11(2): 31-39.http://www.ccsenet.org/journal/index.php/jas/article/view/0/38056
57. Nevill, Paul G., Katharine A Howell, Adam T Cross, Anna V Williams, Xiao Zhong, Julian Tonti-Filippini, Laura M Boykin, Kingsley W Dixon, Ian Small. Plastome-wide rearrangements and gene losses in carnivorous Droseraceae. 2019. Genome Biology and Evolution. In Press. https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evz005/5284917
2018
56. Amisse, Jamisse JG, Joseph Ndunguru, Fred Tairo, Laura M Boykin, Monica A Kehoe, Nurbibi Cossa, Elijah Ateka, Chrissie Rey, Peter Sseruwagi. 2018. First report of Cassava brown streak viruses on wild plant species in Mozambique. Physiological and Molecular Plant Pathology. In press. https://www.sciencedirect.com/science/article/pii/S0885576518301528
55. de Moraes, Letícia Aparecida, Cristiane Muller, Regiane Cristina Oliveira de Freitas Bueno, Antônio Santos, Vinicius Henrique Bello, Bruno Rossitto De Marchi, Luís Fernando Maranho Watanabe, Julio Massaharu Marubayashi, Beatriz Rosa Santos, Valdir Atsushi Yuki, Hélio Minoru Takada, Danielle Ribeiro de Barros, Carolina Garcia Neves, Fábio Nascimento da Silva, Mayra Juline Gonçalves, Murad Ghanim, Laura Boykin, Marcelo Agenor Pavan, Renate Krause-Sakate. 2018. Distribution and phylogenetics of whiteflies and their endosymbiont relationships after the Mediterranean species invasion in Brazil. Scientific Reports 8(1): 14589. https://www.nature.com/articles/s41598-018-32913-1
54. M Shadmany, LM Boykin, R Muhamad, D Omar. 2018. Genetic Diversity of Bemisia tabaci (Hemiptera: Aleyrodidae) Species Complex Across Malaysia. Journal of economic entomology doi: 10.1093/jee/toy273.
53. De Marchi, B.R., Kinene, T., Wainiana, J.M., Krause-Sakate, R. and L.M. Boykin. 2018. Comparative transcriptome analysis reveals genetic diversity in the endosymbiont Hamiltonella between native and exotic populations of Bemisia tabaci from Brazil. PlosOne
https://doi.org/10.1371/journal.pone.0201411
52. Wainaina, J.M., Jagger, H., Ateka, E., Makori, T. Karanja, D., M.A. Kehoe and L.M. Boykin. 2018. Genomic Characterisation and evolutionary relationships of groundnut rosette virus from the western highlands of Kenya. Tropical Plant Pathology https://doi.org/10.1007/s40858-018-0240-2
51. Sseruwagi, P., Boykin, L.M., Tairo, F., Umfuyisoni, J., Fute, T., Kalekayo, D., Harinjaka, R., Savill, A. & Ndunguru, J. 2018. Sub-Saharan Africa 1 is the dominant cryptic species of Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) associated with cassava in Madagascar. Israel Journal of Entomology 48 (2): 123–140. http://doi.org/10.5281/zenodo.1323193
50. Boykin, L.M., Ammar Ghalab, Bruno Rossitto De Marchi, Anders Savill, James M Wainaina, Tonny Kinene, Stephen Lamb, Myriam Rodrigues, Monica A Kehoe, Joseph Ndunguru, Fred Tairo, Peter Sseruwagi, Charles Kayuki, Deogratius Mark, Joel Erasto, Hilda Bachwenkizi, Titus Alicai, Geoffrey Okao-Okuja, Phillip Abidrabo, John Francis Osingada, Jimmy Akono, Elijah Ateka, Brenda Muga, Samuel Kiarie. 2018. Real-time portable genome sequencing for global food security. F1000. https://f1000research.com/articles/7-1101/v1
49. Wainaina JM, Ateka E, Makori T, Kehoe MA, Boykin LM. (2018) Phylogenomic relationship and evolutionary insights of sweet potato viruses from the western highlands of Kenya. PeerJ 6:e5254https://doi.org/10.7717/peerj.5254
48. Macfadyen, Sarina, Paull, Cate, Boykin, Laura M., De Barro, Paul, Maruthi, M. N., Ghosh, Saptarshi, Otim, Michael, Kalyebi, Andrew, Vassão, Daniel G., Sseruwagi, Peter, Tay, Wee Tek, Delatte, Helen, Seguni, Zuberi, Colvin, John and Omongo, Christopher Abu. 2018. Cassava whitefly, Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae), in sub-Saharan African farming landscapes: a review of the factors determining abundance. Bulletin of Entomological Research. ISSN 0007-4853 (Print), 1475-2670 (doi:10.1017/S0007485318000032)
47. Boykin, L.M., T. Kinene, J. Wainaina, S. Seal, H. Mugerwa, S. Macfadyen, P. De Barro, W.T. Tay, L. Kubatko, T. Alicai, C.A. Omongo, F. Tairo, J. Ndunguru and P. Sseruwagi. 2018. Review and future guide to the naming system of African Bemisia tabaci species. Systematic Entomology. Accepted January 2018
46. Sseruwagi, P., Wainaina, J.M., Ndunguru, J., Tumuhimbise, R., Tairo, F., Guo, J., Vrielink, A., Blythe, A., Kinene, T., De Marchi, B., Kehoe, M.A., Tanz, S.K. & Boykin, L.M. 2018. The first transcriptomes from field-collected individual whiteflies (Bemisia tabaci, Hemiptera: Aleyrodidae): a case study of the endosymbiontcomposition. Gates Open Res 2018, 1:16 (doi: 10.12688/gatesopenres.12783.3)
45. Mulenga, Rabson M., Boykin, L.M., Chikoti, P.C, Sichilima, S., Ng’ungi, D. Olufemi, J.A. 2018. Cassava brown streak disease and Ugandan cassava brown streak virus reported for the first time in Zambia. Plant Disease. Accepted February 2018.
2017
44. Ateka, E., T. Alicai, J. Ndunguru, F. Tairo, P. Sseruwagi, S. Kiarie, T. Mikori, M.A. Kehoe and L.M. Boykin. 2017. Unusual occurrence of a DAG motif in the Ipomovirus Cassava brown streak virus and implications for its vector transmission. PlosOne.
43. Boykin, L.M. A. Savill, P. De Barro. 2017. Updated mtCOI reference dataset for the Bemisia tabaci species complex. F1000Research. 6
https://f1000research.com/articles/6-1835/v1
42. Letícia Aparecida de Moraes, Julio Massaharu Marubayashi, Valdir Atsushi Yuki, Murad Ghanim, Vinicius Henrique Bello, Bruno Rossitto De Marchi, Leonardo da Fonseca Barbosa, Laura M Boykin, Renate Krause-Sakate, Marcelo Agenor Pavan. 2017. New invasion of Bemisia tabaci Mediterranean species in Brazil associated to ornamental plants. Phytoparasitica 1-9. https://doi.org/10.1007/s12600-017-0607-9
41. Manani, D. E.M. Ateka, S.R.G. Nyanjom, L.M. Boykin. 2017. Phylogenetic relationships amoung whiteflies in the Bemisia tabaci species complex from major cassava growing areas of Kenya. Insects (81): 25. doi:10.3390/insects8010025
Raw data: www.ncbi.nlm.nih.gov/popset/1153278998
Updated tree post publication (errors were found in original global dataset, we re-downloaded all data directly from GenBank (June 2017), reran the analyses and the tree remains unchanged and can be downloaded here: New Tree.
40. Wainaina, J. De Barro, P.J., Kubatko, L., Kehoe, M.A., Harvey, J., Karanja, D. and L.M. Boykin. 2017. Global Phylogenetic Relationships, Population Structure and Gene Flow Estimation of Trialeurodes vaporariorum (Greenhouse whitefly). Bulletin of Entomological Research.
2016
39. Alicai, T., Ndunguru, J., Sseruwagi,P., Tairo, F., Okao-Okuja,G. Nanvubya, R., Kiiza, L., Kubatko, K., Kehoe,M.A., and Boykin, L.M. 2016. Cassava brown streak virus is outsmarting the cassava immune system with a rapidly evolving genome. Scientific Reports 6: 36164
38. Kinene, T., Wainaina, J., Maina, S., and Boykin, L.M. 2016. Rooting Trees, Methods for. In: Kliman, R.M. (ed.), Encyclopedia of Evolutionary Biology. vol. 3, pp. 489–493. Oxford: Academic Press.
| kinene_etal.pdf |
37. Williams, A.V., J.T Miller, I. Small, P.G. Nevill, L.M. Boykin. 2016. Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia. Molecular Phylogenetics and Evolution. DOI: 10.1016/j.ympev.2015.11.021
2015
36. Ndunguru, J., P. Sseruwagi, F. Tairo, F. Stomeo, S. Maina, A. Djinkeng, M. Kehoe, L. M. Boykin. 2015. Analyses of twelve new whole genome sequences of Cassava Brown Streak Viruses and Ugandan Cassava Brown Streak Viruses from east Africa: Diversity, supercomputing and evidence for further speciation. PLoS ONE 10 (10), E0139321 (2015)
35. Lashkari, M., M. Hentz and L.M. Boykin. 2015. Morphometric comparisons of Diaphorina citri (Hemiptera: Liviidae) populations from Iran, USA and Pakistan. PeerJ. DOI10.7717/peerj.946.
34. Williams, A.V., L.M. Boykin, K.A Howell, P.G. Nevill and I.D. Small. 2015. The complete sequence of the Acacia ligulata chloroplast genome reveals a highly divergent clpP1 gene. PLOSONE. DOI: 10.1371/journal.pone.0125768
2014
33. Boykin, L.M. and P. De Barro. 2014. A practical guide to identifying members of the Bemisia tabaci species complex: and other morphologically identical species. Frontiers in Ecology and Evolution doi: 10.3389/fevo.2014.00045.
32. Schutze M.K., Aketarawong N., Amornsak W., Armstrong K.F., Augustinos A.A., Barr N., Bo W., Bourtzis K., Boykin L.M., Cáceres C., Cameron S.L., Chapman T.A., Chinvinijkul S., Chomič A., De Meyer M., Drosopoulou E., Englezou A., Ekesi S., Gariou-Papalexiou A., Geib S.M., Hailstones D., Hasanuzzaman M., Haymer D., Hee A.K.W., Hendrichs J., Jessup A., Ji Q., Khamis F.M., Krosch M.N. Leblanc, Mahmood K., Malacrida A.R., Mavragani-Tsipidou P., Mwatawala M., Nishida R., Ono H., Reyes J., Rubinoff D., San Jose M., Shelly T.E., Srikachar S., Tan K.H., Thanaphum S., Ul-Haq I., Vijaysegaran S., Wee S.L., Yesmin F., Zacharopoulou A., Clarke A.R. 2014. Synonymization of key pest species within the Bactrocera dorsalis species complex (Diptera: Tephritidae): taxonomic changes based on 20 years of integrative morphological, molecular, cytogenetic, behavioral, and chemoecological data. Systematic Entomology. Early Access November 2014
31. Wang, H.L., J. Yang, L. M. Boykin, Q.Y. Zhao, Y.J. Wang, S.S. Liu, X.W. Wang. 2014. Development, characterization and analysis of microsatellite markers from the transcriptomes of three whitefly Bemisia tabaci species. Scientific Reports 4 doi:10.1038/srep06351
30. Boykin, L.M. 2014. Bemisia tabaci nomenclature: Lessons learned. Pest Management Science. DOI: 10.1002/ps.3709.
2013
29. Boykin, L.M., C.D. Bell, G. Evans, I. Small and P De Barro. 2013. Is agriculture driving the diversification of the Bemisia tabaci species complex (Hemiptera: Sternorrhyncha: Aleyrodidae)? Dating, diversification and biogeographic evidence revealed. BMC Evolutionary Biology.2013, 13:228.
DOI: 10.1186/1471-2148-13-228.
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28. Polston, J.E., P.J. De Barro and L.M. Boykin. 2013. Transmission specificities of plant viruses with the newly identified species of the Bemisia tabaci species complex. Pest Management Science. doi: 10.1002/ps.3738
27. White, B.P., E.M. Pilgrim, L.M. Boykin, E.D. Stein, R.D. Mazor. 2013. Application of four species delimitation methods to a DNA barcoding data set of Southern California insect larvae: Baetis (Ephemeroptera: Baetidae), Eukiefferiella (Diptera: Chironomidae), and Simulium (Diptera: Simuliidae). Freshwater Science. July 2013. Accepted
26. Lashkari, M., A. Sahragard, S.Manzari, V. Malagnini, L.M. Boykin* and R.Hosseini. 2013. Global genetic variation of the Asian citrus psyllid, Diaphorina citri (Hemiptera: Psyllidae) and the primary endosymbiont Wolbachia: links between Iran and the USA detected. *corresponding author. Pest Management Science. doi: 10.1002/ps.3643.
25. Liu, S. J. Melonek, L.M. Boykin, I. Small and K.A. Howell. 2013. PPR-SMRs: ancient proteins with enigmatic functions. RNA Biology 10(9): 1-10.
24. Wang, H.L., J. Yang, L.M. Boykin, Q.Y. Zhao, Q. Li, X.W. Wang and S.S. Liu. 2013. The first insight into the characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci species complex. BMC Genomics 4: 401.
23. Boykin, L.M., M.K. Schutze, M.N. Krosch, A. Chomič, T.A. Chapman, A. Englezou, K.F. Armstrong, A.R. Clarke, D. Hailstones, and S. L. Cameron. 2013. Multi-gene phylogenetic analysis of south-east Asian pest members of the Bactrocera dorsalis species complex (Diptera: Tephritidae) does not support current taxonomy. Journal of Applied Entomology. Early Access: March 12, 2013
22. Krosch, M.N., M.K. Schutze, K.F. Armstrong, Y. Boontop, L.M. Boykin, T.A. Chapman, A. Englezou, S.L. Cameron, D.L. Hailstones and A.R. Clarke. 2013. Piecing together an integrative taxonomic puzzle: microsatellite, wing shape and aedeagus length analyses of Bactrocera dorsalis s.l. (Diptera: Tephritidae) find no evidence of multiple lineages in a proposed contact zone along the Thai/Malay Peninsula. Systematic Entomology 38: 2-13.
2012
21. Tay, W.T., G. A. Evans, L.M. Boykin, P.J. De Barro. 2012. Will the real Bemisia tabaci please stand up? PLoS ONE 7(11): e50550. doi:10.1371/journal.pone.0050550.
20. Boykin, L.M., K.Armstrong, L. Kubatko and, P. De Barro. 2012. DNA Barcoding Invasive Insects: Database Roadblocks. Invertebrate Systematics 26: 506-514.
19. Boykin, L.M., P. De Barro, C. McKenzie, W. Hunter, C. Powell, D.G. Hall, and R.G. Shatters, Jr. 2012. Overview of worldwide diversity of Diaphorina citri Kuwayama mitochondrial cytochrome oxidase 1 haplotypes: two Old World lineages and a New World invasion. Bulletin of Entomological Research 102: 573-582.
18. Boykin, L.M., K.F. Armstrong, L. Kubatko, and P. De Barro. 2012. Species Delimitation and Global Biosecurity. Evolutionary Bioinformatics 8: 1-37.
Video abstract: http://www.youtube.com/watch?v=U4tB7GElcfI.
17. Collins, R., L.M. Boykin, R. Cruickshank and K.F. Armstrong. 2012. Barcoding’s Next Top Model: can K2P go the Distance?. Methods in Ecology and Evolution 3(3): 457-465.
2011
16. De Barro, P.J., S. Liu, L.M. Boykin, and A.B. Dinsdale. 2011. Bemisia tabaci: A Statement of Species Status. Annual Review of Entomology. 56 :1–19.
2010
15. deWaard, J.R., Mitchell, A., Keena, M.A., Gopurenko, D., Boykin, L.M., Armstrong, K.F., Pogue, M.G., Lima, J., Floyd, R., Hanner, R.H. and Humble, L.M. 2010. Towards a global barcode library for Lymantria (Lepidoptera: Lymantriinae) tussock moths of biosecurity concern. PLoS ONE 5(12):
e14280.
14. Boykin, L.M., R.G. Shatters, Jr., D.G. Hall, D. Dean, and P. Beerli. 2010. Genetic variation of Anastrepha suspensa (Diptera: Tephritidae) in Florida and the Caribbean using DNA microsatellite markers. Journal of Economic Entomology. 103(6): 2214-2222.
13. Boykin, L. M., L.A. Salter and T.K. Lowrey. 2010. Comparison of methods for rooting phylogenetic trees: A case study using Orcuttieae (Poaceae: Chloridoideae). Molecular Phylogenetics and Evolution. 54(3): 687-700.
2009
12. Hunter, W.B., Shelby, K., Boykin, L.M., Dang, P.M., Weathersbee III A.A. 2009. Ribosomal proteins and expressed sequence tags from Lysiphlebus testaceipes (Hymenoptera: Aphidiidae). Florida Scientist. 72(3): 196-207.
11. Shatters, Jr., R.G. C. A. Powell, L. M. Boykin, H. Liansheng, and C. L. McKenzie. 2009. Improved DNA Barcoding Method for Bemisia tabaci and Related Aleyrodidae: Development of Universal and Bemisia tabaci Biotype-Specific Mitochondrial Cytochrome c Oxidase I Polymerase Chain Reaction
Primers. Journal of Economic Entomology 102(2): 750-758.
2008
10. Boykin, L. M., W. T. Pockman, and T.K. Lowrey. 2008. Leaf anatomy of Orcuttieae (Poaceae:Chloridoideae): More evidence of C4 photosynthesis without Kranz anatomy. Madroño 55:143-150.
2007
9. Boykin, L.M., R.G. Shatters, Jr., R.C. Rosell, C.L. McKenzie, R.A. Bagnall, P. De Barro, and D.R. Frohlich. 2007. Global Relationships of Bemisia tabaci (Hemiptera: Aleyrodidae) revealed using Bayesian Analysis of mitochondrial COI DNA sequence. Molecular Phylogenetics and Evolution 44: 1306-
1319.
8. Boykin, L.M., R.A. Bagnall, D.R.Frohlich, D.G. Hall, W.B. Hunter, C.S. Katsar, C.L. McKenzie, R.C. Rosell, and R.G. Shatters, Jr. 2007. Twelve polymorphic microsatellite loci from the Asian Citrus Psyllid, Diaphorina citri Kuwayama, the vector for citrus greening disease, Huanglongbing.
Molecular Ecology Notes 7: 1202-1204.
2006
7. Boykin, L.M. R.G. Shatters, Jr., D.G. Hall, R.E. Burns, and R. A. Franqui. 2006. Analysis of Host Preference and Geographic Distribution of Anastrepha suspensa (Diptera: Tephritidae) Using Phylogenetic Analyses of Mitochondrial Cytochrome Oxidase I DNA Sequence Data. Bulletin of Entomological Research 96: 457-469.
6. Shatters, R.G., L.M. Boykin, S.L. Lapointe, A. Weathersbee, and W. Hunter. 2006. Phylogenetic and structural relationships of PR-5 gene family reveals an ancient multigene family conserved in plants and select animal taxa. Journal of Molecular Evolution 63: 12-29.
2005-1997
5. Boykin, L. M., M. C. Vasey, V. T. Parker, and R. Patterson. 2005. Two lineages of Arctostaphylos (Ericaceae) identified using the Internal transcribed spacer (ITS) region of the nuclear genome. Madroño 53 (3): 139-147.
4. Kuiken, C., Yusim, K., Boykin, L.M and R. Richardson. 2005. The Los Alamos Hepatitis C Sequence Database. Bioinformatics 21(3): 379-384.
3. Macken, C., H. Lu, J. Goodman, and L. Boykin. 2001. The value of a database in surveillance and vaccine selection. Pp. 103-106 in A.D.M.E Osterhaus, N. Cox & A.W Hampson, eds. Options for the Control of Influenza IV. Elsevier Science, Amsterdam.
2. Boykin, L.M., Lu. H., Macken C. A., Mukundan P.H., Naik A. K. 2000. Reconstructing the Evolution of Influenza B Viruses Using Maximum Likelihood Methods. Los Alamos Unclassified Report (LAUR) 00-764.
1. Keeley, Jon and L. Boykin. 1997. Phenetic Analysis of Arctostaphylos parryana. I. Two new burl-forming subspecies. Madroño 44(3): 253-257.
27. White, B.P., E.M. Pilgrim, L.M. Boykin, E.D. Stein, R.D. Mazor. 2013. Application of four species delimitation methods to a DNA barcoding data set of Southern California insect larvae: Baetis (Ephemeroptera: Baetidae), Eukiefferiella (Diptera: Chironomidae), and Simulium (Diptera: Simuliidae). Freshwater Science. July 2013. Accepted
26. Lashkari, M., A. Sahragard, S.Manzari, V. Malagnini, L.M. Boykin* and R.Hosseini. 2013. Global genetic variation of the Asian citrus psyllid, Diaphorina citri (Hemiptera: Psyllidae) and the primary endosymbiont Wolbachia: links between Iran and the USA detected. *corresponding author. Pest Management Science. doi: 10.1002/ps.3643.
25. Liu, S. J. Melonek, L.M. Boykin, I. Small and K.A. Howell. 2013. PPR-SMRs: ancient proteins with enigmatic functions. RNA Biology 10(9): 1-10.
24. Wang, H.L., J. Yang, L.M. Boykin, Q.Y. Zhao, Q. Li, X.W. Wang and S.S. Liu. 2013. The first insight into the characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci species complex. BMC Genomics 4: 401.
23. Boykin, L.M., M.K. Schutze, M.N. Krosch, A. Chomič, T.A. Chapman, A. Englezou, K.F. Armstrong, A.R. Clarke, D. Hailstones, and S. L. Cameron. 2013. Multi-gene phylogenetic analysis of south-east Asian pest members of the Bactrocera dorsalis species complex (Diptera: Tephritidae) does not support current taxonomy. Journal of Applied Entomology. Early Access: March 12, 2013
22. Krosch, M.N., M.K. Schutze, K.F. Armstrong, Y. Boontop, L.M. Boykin, T.A. Chapman, A. Englezou, S.L. Cameron, D.L. Hailstones and A.R. Clarke. 2013. Piecing together an integrative taxonomic puzzle: microsatellite, wing shape and aedeagus length analyses of Bactrocera dorsalis s.l. (Diptera: Tephritidae) find no evidence of multiple lineages in a proposed contact zone along the Thai/Malay Peninsula. Systematic Entomology 38: 2-13.
2012
21. Tay, W.T., G. A. Evans, L.M. Boykin, P.J. De Barro. 2012. Will the real Bemisia tabaci please stand up? PLoS ONE 7(11): e50550. doi:10.1371/journal.pone.0050550.
20. Boykin, L.M., K.Armstrong, L. Kubatko and, P. De Barro. 2012. DNA Barcoding Invasive Insects: Database Roadblocks. Invertebrate Systematics 26: 506-514.
19. Boykin, L.M., P. De Barro, C. McKenzie, W. Hunter, C. Powell, D.G. Hall, and R.G. Shatters, Jr. 2012. Overview of worldwide diversity of Diaphorina citri Kuwayama mitochondrial cytochrome oxidase 1 haplotypes: two Old World lineages and a New World invasion. Bulletin of Entomological Research 102: 573-582.
18. Boykin, L.M., K.F. Armstrong, L. Kubatko, and P. De Barro. 2012. Species Delimitation and Global Biosecurity. Evolutionary Bioinformatics 8: 1-37.
Video abstract: http://www.youtube.com/watch?v=U4tB7GElcfI.
17. Collins, R., L.M. Boykin, R. Cruickshank and K.F. Armstrong. 2012. Barcoding’s Next Top Model: can K2P go the Distance?. Methods in Ecology and Evolution 3(3): 457-465.
2011
16. De Barro, P.J., S. Liu, L.M. Boykin, and A.B. Dinsdale. 2011. Bemisia tabaci: A Statement of Species Status. Annual Review of Entomology. 56 :1–19.
2010
15. deWaard, J.R., Mitchell, A., Keena, M.A., Gopurenko, D., Boykin, L.M., Armstrong, K.F., Pogue, M.G., Lima, J., Floyd, R., Hanner, R.H. and Humble, L.M. 2010. Towards a global barcode library for Lymantria (Lepidoptera: Lymantriinae) tussock moths of biosecurity concern. PLoS ONE 5(12):
e14280.
14. Boykin, L.M., R.G. Shatters, Jr., D.G. Hall, D. Dean, and P. Beerli. 2010. Genetic variation of Anastrepha suspensa (Diptera: Tephritidae) in Florida and the Caribbean using DNA microsatellite markers. Journal of Economic Entomology. 103(6): 2214-2222.
13. Boykin, L. M., L.A. Salter and T.K. Lowrey. 2010. Comparison of methods for rooting phylogenetic trees: A case study using Orcuttieae (Poaceae: Chloridoideae). Molecular Phylogenetics and Evolution. 54(3): 687-700.
2009
12. Hunter, W.B., Shelby, K., Boykin, L.M., Dang, P.M., Weathersbee III A.A. 2009. Ribosomal proteins and expressed sequence tags from Lysiphlebus testaceipes (Hymenoptera: Aphidiidae). Florida Scientist. 72(3): 196-207.
11. Shatters, Jr., R.G. C. A. Powell, L. M. Boykin, H. Liansheng, and C. L. McKenzie. 2009. Improved DNA Barcoding Method for Bemisia tabaci and Related Aleyrodidae: Development of Universal and Bemisia tabaci Biotype-Specific Mitochondrial Cytochrome c Oxidase I Polymerase Chain Reaction
Primers. Journal of Economic Entomology 102(2): 750-758.
2008
10. Boykin, L. M., W. T. Pockman, and T.K. Lowrey. 2008. Leaf anatomy of Orcuttieae (Poaceae:Chloridoideae): More evidence of C4 photosynthesis without Kranz anatomy. Madroño 55:143-150.
2007
9. Boykin, L.M., R.G. Shatters, Jr., R.C. Rosell, C.L. McKenzie, R.A. Bagnall, P. De Barro, and D.R. Frohlich. 2007. Global Relationships of Bemisia tabaci (Hemiptera: Aleyrodidae) revealed using Bayesian Analysis of mitochondrial COI DNA sequence. Molecular Phylogenetics and Evolution 44: 1306-
1319.
8. Boykin, L.M., R.A. Bagnall, D.R.Frohlich, D.G. Hall, W.B. Hunter, C.S. Katsar, C.L. McKenzie, R.C. Rosell, and R.G. Shatters, Jr. 2007. Twelve polymorphic microsatellite loci from the Asian Citrus Psyllid, Diaphorina citri Kuwayama, the vector for citrus greening disease, Huanglongbing.
Molecular Ecology Notes 7: 1202-1204.
2006
7. Boykin, L.M. R.G. Shatters, Jr., D.G. Hall, R.E. Burns, and R. A. Franqui. 2006. Analysis of Host Preference and Geographic Distribution of Anastrepha suspensa (Diptera: Tephritidae) Using Phylogenetic Analyses of Mitochondrial Cytochrome Oxidase I DNA Sequence Data. Bulletin of Entomological Research 96: 457-469.
6. Shatters, R.G., L.M. Boykin, S.L. Lapointe, A. Weathersbee, and W. Hunter. 2006. Phylogenetic and structural relationships of PR-5 gene family reveals an ancient multigene family conserved in plants and select animal taxa. Journal of Molecular Evolution 63: 12-29.
2005-1997
5. Boykin, L. M., M. C. Vasey, V. T. Parker, and R. Patterson. 2005. Two lineages of Arctostaphylos (Ericaceae) identified using the Internal transcribed spacer (ITS) region of the nuclear genome. Madroño 53 (3): 139-147.
4. Kuiken, C., Yusim, K., Boykin, L.M and R. Richardson. 2005. The Los Alamos Hepatitis C Sequence Database. Bioinformatics 21(3): 379-384.
3. Macken, C., H. Lu, J. Goodman, and L. Boykin. 2001. The value of a database in surveillance and vaccine selection. Pp. 103-106 in A.D.M.E Osterhaus, N. Cox & A.W Hampson, eds. Options for the Control of Influenza IV. Elsevier Science, Amsterdam.
2. Boykin, L.M., Lu. H., Macken C. A., Mukundan P.H., Naik A. K. 2000. Reconstructing the Evolution of Influenza B Viruses Using Maximum Likelihood Methods. Los Alamos Unclassified Report (LAUR) 00-764.
1. Keeley, Jon and L. Boykin. 1997. Phenetic Analysis of Arctostaphylos parryana. I. Two new burl-forming subspecies. Madroño 44(3): 253-257.
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Updated August 27, 2022 |